Matthias Stöck

Mateus C. Adolfi; Kang Du; Susanne Kneitz; Cédric Cabau; Margot Zahm; Christophe Klopp; Romain Feron; Rômulo V. Paixão; Eduardo S. Varela; Fernanda L. de Almeida; Marcos A. de Oliveira; Rafael H. Nóbrega; Céline Lopez-Roques; Carole Iampietro; Jérôme Lluch; Werner Kloas; Sven Wuertz; Fabian Schaefer; Matthias Stöck; Yann Guiguen; Manfred Schartl

A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

Scientific Reports. - 11(2021), Art. 21544

Sylvia Hofmann; Chitra Bahadur Baniya; Matthias Stöck; Lars Podsiadlowski

De novo assembly, annotation, and analysis of transcriptome data of the Ladakh Ground skink provide genetic information on high-altitude adaptation

Genes. - 12(2021)9, Art. 1423

Lukáš Kratochvíl; Matthias Stöck; Michail Rovatsos; Mónica Bullejos; Amaury Herpin; Daniel L. Jeffries; Catherine L. Peichel; Nicolas Perrin; Nicole Valenzuela; Martina Johnson Pokorná

Expanding the classical paradigm: what we have learnt from vertebrates about sex chromosome evolution

Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1833, Art. 20200097

Matthias Stöck; Dmitrij Dedukh; Radka Reifová; Dunja K. Lamatsch; Zuzana Starostová; Karel Janko

Sex chromosomes in meiotic, hemiclonal, clonal and polyploid hybrid vertebrates: along the ‘extended speciation continuum’

Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1833, Art. 20200103

compiled and edited by Lukáš Kratochvíl and Matthias Stöck

Challenging the paradigm in sex chromosome evolution: empirical and theoretical insights with a focus on vertebrates (Part II): [Theme Issue]

Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1833

Matthias Stöck; Lukáš Kratochvíl; Heiner Kuhl; Michail Rovatsos; Ben J. Evans; Alexander Suh; Nicole Valenzuela; Frédéric Veyrunes; Qi Zhou; Tony Gamble; Blanche Capel; Manfred Schartl; Yann Guiguen

A brief review of vertebrate sex evolution with a pledge for integrative research: towards ‘sexomics’

Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832, Art. 20200426

compiled and edited by Lukáš Kratochvíl and Matthias Stöck

Challenging the paradigm in sex chromosome evolution: empirical and theoretical insights with a focus on vertebrates (Part I): [Theme Issue]

Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832

Lukáš Kratochvíl; Matthias Stöck

Preface

Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832, Art. 20200426

Heiner Kuhl; Yann Guiguen; Christin Höhne; Eva Kreuz; Kang Du; Christophe Klopp; Céline Lopez-Roques; Elena Santidrian Yebra-Pimentel; Mitica Ciorpac; Jörn Gessner; Daniela Holostenco; Wibke Kleiner; Klaus Kohlmann; Dunja K. Lamatsch; Dmitry Prokopov; Anastasia Bestin; Emmanuel Bonpunt; Bastien Debeuf; Pierrick Haffray; Romain Morvezen; Pierre Patrice; Radu Suciu; Ron Dirks; Sven Wuertz; Werner Kloas; Manfred Schartl; Matthias Stöck

A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes

Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832, 20200089

Romain Feron; Qiaowei Pan; Ming Wen; Boudjema Imarazene; Elodie Jouanno; Jennifer Anderson; Amaury Herpin; Laurent Journot; Hugues Parrinello; Christophe Klopp; Verena A. Kottler; Alvaro S. Roco; Kang Du; Susanne Kneitz; Mateus Adolfi; Catherine A. Wilson; Braedan McCluskey; Angel Amores; Thomas Desvignes; Frederick W. Goetz; Ato Takanashi; Mari Kawaguchi; Harry William Detrich III; Marcos A. Oliveira; Rafael H. Nóbrega; Takashi Sakamoto; Masatoshi Nakamoto; Anna Wargelius; Ørjan Karlsen; Zhongwei Wang; Matthias Stöck; Robert M. Waterhouse; Ingo Braasch; John H. Postlethwait; Manfred Schartl; Yann Guiguen

RADSex : a computational workflow to study sex determination using restriction site- associated DNA sequencing data

Molecular Ecology Resources. - 21(2021)5, 1715-1731

Christin Höhne; Dmitry Prokopov; Heiner Kuhl; Kang Du; Christophe Klopp; Sven Wuertz; Vladimir Trifonov; Matthias Stöck

The immune system of sturgeons and paddlefish (Acipenseriformes): a review with new data from a chromosome-scale sturgeon genome

Reviews in Aquaculture. - 13(2021)3, 1709-1729

2020

Frank Meyer; Arne Drews; Richard Podloucky; Norman Wagner; Matthias Stöck

3.11 Wechselkröte (Bufotes viridis)

Rote Liste und Gesamtartenlisteder Amphibien (Amphibia) Deutschlands / Redaktion: Katja Rohde-Fingerle, Günter Matzke-Hajek, Tino Broghammer, Jonas Bunte und Margret Binot-Hafke. - Münster, 2020. - (Naturschutz und biologische Vielfalt ; 170) Heft 4, S. 46-47

Wolf-Rüdiger Große; Arno Geiger; Günter Hansbauer; Matthias Stöck

3.13 Laubfrosch (Hyla arborea)

David Eichenberg; Markus Bernhardt-Römermann; Diana Bowler; Helge Bruelheide; Klaus-Jürgen Conze; Jens Dauber; Jürgen Dengler; Diana Engels; Thomas Fartmann; Dieter Frank; Christian Geske; Volker Grescho; David Harter; Klaus Henle; Sylvia Hofmann; Ute Jandt; Florian Jansen; Johannes Kamp; Antje Kautzner; Birgitta König-Ries; Roland Krämer; Andreas Krüß; Hjalmar Kühl; Martin Ludwig; Holger Lueg; Rudolf May; Martin Musche; Andreas Opitz; Katrin Ronnenberg; Annemarie Schacherer; Livia Schäffler; Katja Schiffers; Ulrich Schulte; Johannes Schwarz; Thomas Sperle; Sabine Stab; Matthias Stöck; Florian Theves; Bernd Trockur; Karsten Wesche; Magnus Wessel; Marten Winter; Christian Wirth; Aletta Bonn

Langfristige Biodiversitätsveränderungen in Deutschland erkennen - mit Hilfe der Vergangenheit in die Zukunft schauen

Natur und Landschaft. - 95(2020)11, S. 479-491

Kang Du; Matthias Stöck; Susanne Kneitz; Christophe Klopp; Joost M. Woltering; Mateus Contar Adolfi; Romain Feron; Dmitry Prokopov; Alexey Makunin; Ilya Kichigin; Cornelia Schmidt; Petra Fischer; Heiner Kuhl; Sven Wuertz; Jörn Gessner; Werner Kloas; Cédric Cabau; Carole Iampietro; Hugues Parrinello; Chad Tomlinson; Laurent Journot; John H. Postlethwait; Ingo Braasch; Vladimir Trifonov; Wesley C. Warren; Axel Meyer; Yann Guiguen; Manfred Schartl

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

Nature Ecology & Evolution. - 4(2020)6, S. 841-852

Heiner Kuhl; Ling Li; Sven Wuertz; Matthias Stöck; Xu-Fang Liang; Christophe Klopp

CSA: a high-throughput chromosome-scale assembly pipeline for vertebrate genomes

GigaScience. - 9(2020)5, giaa034

2019

Sonja C. Jähnig - lead author; Rita Adrian; Hans-Peter Grossart; Jörg Freyhof; Matthias Stöck; Franz Hölker; Jonathan Jeschke; Robert Arlinghaus; Mark Gessner; Martin Pusch; Daniel Hering ...; Peter Haase; Hans Jürgen Hahn ...; Dietrich Borchardt ...; Frank Suhling; Dietmar Staile ...; Thomas Berendonk ...; Jürgen Geist; Ursula Gaedke; Guntram Weithoff; Jörg Dutz ...; Judith Piontek; Marlene Pätzig; Steffen Pauls; Nike Sommerwerk

Living waters: a research agenda for the biodiversity of inland and coastal waters

13 S.

ed. by Matthias Stöck; Lukas Kratochvil

Paradigm shift in sex chromosome evolution

Abstracts of the workshop held in Berlin, 19-22 September 2019

Sonja C. Jähnig - Federführung; Rita Adrian; Hans-Peter Grossart; Jörg Freyhof; Matthias Stöck; Franz Hölker; Jonathan Jeschke; Robert Arlinghaus; Mark Gessner; Martin Pusch; Daniel Hering ...; Peter Haase; Hans Jürgen Hahn ...; Dietrich Borchardt ...; Frank Suhling; Dietmar Staile ...; Thomas Berendonk ...; Jürgen Geist; Ursula Gaedke; Guntram Weithoff; Jörg Dutz ...; Judith Piontek; Marlene Pätzig; Steffen Pauls; Nike Sommerwerk

Lebendiges Wasser: Forschungsagenda zur biologischen Vielfalt der Binnen- und Küstengewässer

13 S.

Sylvia Hofmann; Heiner Kuhl; Chitra Bahadur Baniya; Matthias Stöck

Multi-tissue transcriptomes yield information on high-altitude adaptation and sex-determination in Scutiger cf. sikimmensis

Genes. - 10(2019)11, art. 873

Matthias Stöck; Florian Reisch; Morten Elmeros; Doreen Gabriel; Werner Kloas; Eva Kreuz; Pia Lassen; Alexandra Esther

The potential of VKORC1 polymorphisms in Mustelidae for evolving anticoagulant resistance through selection along the food chain

PLoS One. - 14(2019)8, e0221706

Beata Rozenblut-Koscisty; Maria Ogielska; Juliane Hahn; Denise Kleemann; Ronja Kossakowski; Stephanie Tamschick; Viola Schöning; Angela Krüger; Ilka Lutz; Petros Lymberakis; Werner Kloas; Matthias Stöck

Impacts of the synthetic androgen Trenbolone on gonad differentiation and development: comparisons between three deeply diverged anuran families

Scientific Reports. - 9(2019)art. 9623

Matthias Stöck; Fatemeh Fakharzadeh; Heiner Kuhl; Beata Rozenblut-Koscisty; Sophie Leinweber; Riddhi Patel; Mehregan Ebrahimi; Sebastian Voitel; Josef Friedrich Schmidtler; Haji Gholi Kami; Maria Ogielska; Daniel W. Förster

Shedding light on a secretive tertiary urodelean relict: Hynobiid salamanders (Paradactylodon persicus s. l.) from Iran, illuminated by phylogeographic, developmental and transcriptomic data

Genes. - 10(2019)4, art. 306

Kang Du; Sven Wuertz; Mateus Adolfi; Susanne Kneitz; Matthias Stöck; Marcos Oliveira; Rafael Nobrega; Jenny Ormanns; Werner Kloas; Romain Feron; Christophe Klopp; Hugues Parrinello; Laurent Journot; Shunping He; John Postlethwait; Axel Meyer; Yann Guiguen; Manfred Schartl

The genome of the arapaima (Arapaima gigas) provides insights into gigantism, fast growth and chromosomal sex determination system

Scientific Reports. - 9(2019)art. 5293

2018

Christophe Dufresnes; Glib Mazepa; Nicolas Rodrigues; Alan Brelsford; Spartak N. Litvinchuk; Roberto Sermier; Guillaume Lavanchy; Caroline Betto-Colliard; Olivier Blaser; Amael Borzee; Elisa Cavoto; Guillaume Fabre; Karim Ghali; Christine Grossen; Agnes Horn; Julien Leuenberger; Barret C. Phillips; Paul A. Saunders; Romain Savary; Tiziano Maddalena; Matthias Stöck; Sylvain Dubey; Daniele Canestrelli; Daniel L. Jeffries

Formal description of the new tree frog species inhabiting Northern Italy and Southern Switzerland

Bulletin de la Societe Vaudoise des Sciences Naturelles. - 97(2018), S. 5-11

Jörn F. Gerchen; Christophe Dufresnes; Matthias Stöck

Introgression across hybrid zones is not mediated by large x-effects in green toads with undifferentiated sex chromosomes

American Naturalist. - 192(2018)5, E 178-E 188

Genomic evidence for cryptic speciation in tree frogs from the Apennine Peninsula, with description of Hyla perrini sp. nov

Frontiers in Ecology and Evolution. - 6(2018)art. 144

Wesley C. Warren; Raquel Garcia-Perez; Sen Xu; Kathrin P. Lampert; Domitille Chalopin; Matthias Stöck; Laurence Loewe; Yuan Lu; Lukas Kuderna; Patrick Minx; Michael J. Montague; Chad Tomlinson; LaDeana W. Hillier; Daniel N. Murphy; John Wang; Zhongwei Wang; Constantino Macias Garcia; Gregg C. W. Thomas; Jean-Nicolas Volff; Fabiana Farias; Bronwen Aken; Ronald B. Walter; Kim D. Pruitt; Tomas Marques-Bonet; Matthew W. Hahn; Susanne Kneitz; Michael Lynch; Manfred Schartl

Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly

Nature Ecology & Evolution. - 2(2018)4, S. 669-679

Sergey V. Guselnikov; Konstantin O. Baranov; Alexander M. Najakshin; Ludmila V. Mechetina; Nikolai A. Chikaev; Alexey I. Makunin; Sergey V. Kulemzin; Daria A. Andreyushkova; Matthias Stöck; Sven Wuertz; Jörn Gessner; Wesley C. Warren; Manfred Schartl; Vladimir A. Trifonov; Alexander V. Taranin

Diversity of immunoglobulin light chain genes in non-teleost ray-finned fish uncovers IgL subdivision into five ancient isotypes

Frontiers in Immunology. - 9(2018)art. 1079

Christophe Dufresnes; Petros Lymberakis; Panagiotis Kornilios; Romain Savary; Nicolas Perrin; Matthias Stöck

Phylogeography of Aegean green toads (Bufo viridis subgroup): continental hybrid swarm vs. insular diversification with discovery of a new island endemic

BMC Evolutionary Biology. - 18(2018)67

Caroline Betto-Colliard; Sylvia Hofmann; Roberto Sermier; Nicolas Perrin; Matthias Stöck

Profound genetic divergence and asymmetric parental genome contributions as hallmarks of hybrid speciation in polyploid toads

Proceedings of the Royal Society of London : Ser. B, Biological Sciences. - 285(2018)1872, art. 20172667

2017

Andrea Zikova; Claudia Lorenz; Frauke Hoffmann; Wibke Kleiner; Ilka Lutz; Matthias Stöck; Werner Kloas

Endocrine disruption by environmental gestagens in amphibians: a short review supported by new in vitro data using gonads of Xenopus laevis

Chemosphere. - 181(2017), S. 74-82

Sylvia Hofmann; Matthias Stöck; Yuchi Zheng; Francesco G. Ficetola; Jia-Tang Li; Ulrich Scheidt; Joachim Schmidt

Molecular phylogenies indicate a Paleo-Tibet origin of Himalayan lazy toads (Scutiger)

Scientific Reports. - 7(2017) art.3308

2016

Christophe Dufresnes; Spartak N. Litvinchuk; Amael Borzee; Yikweon Jang; Jia-Tang Li; Ikuo Miura; Nicolas Perrin; Matthias Stöck

Phylogeography reveals an ancient cryptic radiation in East-Asian tree frogs (Hyla japonica group) and complex relationships between continental and island lineages

BMC Evolutionary Biology. - 16(2016)138

Stephanie Tamschick; Beata Rozenblut-Koscisty; Maria Ogielska; Andreas Lehmann; Petros Lymberakis; Frauke Hoffmann; Ilka Lutz; Rudolf J. Schneider; Werner Kloas; Matthias Stöck

Impaired gonadal and somatic development corroborate vulnerability differences to the synthetic estrogen ethinylestradiol among deeply diverged anuran lineages

Aquatic Toxicology. - 177(2016), S. 503-514

Christophe Dufresnes; Spartak N. Litvinchuk; Julien Leuenberger; Karim Ghali; Oleksandr Zinenko; Matthias Stöck; Nicolas Perrin

Evolutionary melting pots

Molecular Ecology. - 25(2016)17, S. 4285-4300

Stephanie Tamschick; Beata Rozenblut-Koscisty; Maria Ogielska; David Kekenj; Franz Gajewski : Angela Krüger; Werner Kloas; Matthias Stöck

The plasticizer bisphenol A affects somatic and sexual development, but differently in pipid, hylid and bufonid anurans

Environmental Pollution. - 216(2016), S. 282-291

Jörn F. Gerchen; Samuel J. Reichert; Johannes T. Röhr; Christoph Dietrich; Werner Kloas; Matthias Stöck

A single transcriptome of a green toad (Bufo viridis) yields candidate genes for sex determination and -differentiation and non-anonymous population genetic markers

PLoS One. - 11(2016)5, e0156419

Stephanie Tamschick; Beata Rozenblut-Koscisty; Maria Ogielska; Andreas Lehmann; Petros Lymberakis; Frauke Hoffmann; Ilka Lutz; Werner Kloas; Matthias Stöck

Sex reversal assessments reveal different vulnerability to endocrine disruption between deeply diverged anuran lineages

Scientific Reports. - 6(2016) art.23825

Christophe Dufresnes; Tomasz Majtyka; Stuart J. E. Baird; Jörn F. Gerchen; Amael Borzee; Romain Savary; Maria Ogielska; Nicolas Perrin; Matthias Stöck

Empirical evidence for large X-effects in animals with undifferentiated sex chromosomes

Scientific Reports. - 6(2016) art.21029

Matthias Stöck; Gianni Grifoni; Nabil Armor; Ulrich Scheidt; Alessandra Sicilia; Nicola Novarini

On the origin of the recent herpetofauna of Sicily

Zoologischer Anzeiger. - 261(2016), S. 70-81

G. Francesco Ficetola; Matthias Stöck

Do hybrid-origin polyploid amphibians occupy transgressive or intermediate ecological niches compared to their diploid ancestors?

Journal of Biogeography. - 43(2016)4, S. 703-715

2015

Christophe Dufresnes; Amael Borzee; Agnes Horn; Matthias Stöck; Massimo Ostini; Roberto Sermier; Jerome Wassef; Spartak N. Litvinchuck; Tiffany A. Kosch; Bruce Waldman; Yikweon Jang; Alan Brelsford; Nicolas Perrin

Sex-chromosome homomorphy in palearctic tree frogs results from both turnovers and X-Y recombination

Molecular Biology and Evolution. - 32(2015)9, S. 2328-2337

Fatemeh Fakharzadeh; Jamshid Darvish; Haji Gholi Kami; Fereshteh Ghassemzadeh; Eskandar Rastegar-Pouyani; Matthias Stöck

Discovery of triploidy in Palearctic green toads (Anura: Bufonidae) from Iran with indications for a reproductive system involving diploids and triploids

Zoologischer Anzeiger. - 255(2015), S. 25-31

Stephanie Tamschick; Beata Rozenblut-Koscisty; Lucio Bonato; Christiphe Dufresnes; Petros Lymberakis; Werner Kloas; Maria Ogielska; Matthias Stöck

Sex chromosome conservation, DMRT1 phylogeny and gonad morphology in diploid palearctic green toads (Bufo viridis subgroup)

Cytogenetic and Genome Research. - 144(2014)4, S. 315-324

C. Betto-Colliard; R. Sermier; S. Litvinchuk; N. Perrin; M. Stöck

Origin and genome evolution of polyploid green toads in Central Asia

Heredity. - 114(2015)3, S. 300-308

2014

Christophe Dufresnes; Youna Bertholet; Jerome Wassef; Karim Ghali; Romain Savary; Baptiste Pasteur; Alan Brelsford; Beate Rozenblut-Koscisty; Maria Ogielska; Matthias Stöck; Nicolas Perrin

Sex-chromosome differentiation parallels postglacial range expansion in European tree frogs (Hyla arborea)

Evolution. - 68(2014)12, S. 3445-3456

C. Dufresnes; L. Bonato; N. Novarini; C. Betto-Colliard; N. Perrin; M. Stöck

Inferring the degree of incipient speciation in secondary contact zones of closely related lineages of Palearctic green toads (Bufo viridis subgroup)

Heredity. - 113(2014)1, S. 9-20

Christophe Dufresnes; Matthias Stöck; Alan Brelsford; Nicolas Perrin

Range-wide sex-chromosome sequence similarity supports occasional XY recombination in European tree frogs (Hyla arborea)

PLoS One. - 9(2014)6, e97959

2013

F. Lillo; C. Dufresnes; F. P. Faraone; M. Lo Valvo; M. Stöck

Identification and potential origin of invasive clawed frogs Xenopus (Anura: Pipidae) in Sicili based on mitochondrial and nuclear DNA

Italian Journal of Zoology. - 80(2013)4, S. 566-573

Christophe Dufresnes; Jérome Wassef; Karim Ghali; Alan Brelsford; Matthias Stöck; Petros Lymberakis; Jelka Crnobrnja-Isailovic; Nicolas Perrin

Conservation phylogeography: does historical diversity contribute to regional vulnerability in European tree frogs (Hyla arborea)?

Molecular Ecology. - 22(2013)22, S. 5669-5684

M. Stöck; D. K. Lamatsch

Low rates of X-Y recombination, not turnovers, account for homomorphic swx chromosomes in several diploid species of Palearctic green toads (Bufo viridis subgroup)

Journal of Evolutionary Biology. - 26(2013)3, S. 674-682

Caroline Betto-Colliard; Roberto Sermier; Nicolas Perrin; Matthias Stöck

Development and cross-amplification of thirty microsatellite loci in five diploid and polyploid Central Asian species of Palearctic green toads (Bufo viridis subgroup)

Conservation Genetics Resources. - 5(2013)1, S. 243-249

2012

Matthias Stöck; Christophe Dufresnes; Spartak N. Litvinchuk; Petros Lymberakis; Sébastien Biollay; Matthieu Berroneau; Amaël Borzée; Karim Ghali; Maria Ogielska; Nicolas Perrin

Cryptic diversity among Western palearctic tree frogs

Molecular Phylogenetics and Evolution. - 65(2012)1, S. 1-9