Molecular Ecology and Genomics

Group profile
Lower Oder Valley National Park, NE Germany

Lower Oder Valley National Park, NE Germany (photo: MT Monaghan)

We study the evolution and ecology of freshwater insects, plankton, microbes, and fish, focusing on large rivers and lakes. We use molecular methods (genetics - genomics - bioinformatics) to study evolution and lineage diversification, to better understand the response of organisms and communities to environmental change, and to provide an ecological component to interdisciplinary projects that balance societal needs with biodiverse ecosystems.

Group members

Alumni

Former Postdocs

Maria Alp (French National Institute for Agriculture, Food, and Environment (INRAE) - Lyon)
Kingsly C. Beng (Helmholtz Institute for Functional Marine Biodiversity at the University of Oldenburg)
Elizabeth Bourne (Private industry)
Prof Maribet Gamboa (Universidad Católica de la Santísima - Concepción)
Paul R. Johnston (University of St. Andrews)
Ignacio Lucas-Lledo (Universitat de València)
Tatiana Semenova (Private industry)
Jasmine Smith (Private industry)
Norman Warthmann (International Atomic Energy Agency (IAEA) | IAEA · FAO/IAEA Agriculture and Biotechnology Laboratories - Vienna)
Prof Kozo Watanabe (Ehime University - Matsuyama)
Christian Wurzbacher (TU Munich)
Prof Sakiko Yaegashi (University of Yamanashi)

Former Doctoral students

Seraina Bracamonte
Maja Grubisic
Felix Heeger
Marie Hoffmann
Ann-Christin Honnen
Alessandro Manfrin
Sereina Rutschmann
Paul Schmidt Yáñez
Laurent Vuataz

Former Master's and Bachelor's students (as primary supervisor)

Nina Broszio
Mary Ann Davenport
Valentina Galeone
Anna Hjalmarsson
Hanna Kissener
Jana Knüpfer
Bram Koese
Janina Kypke
Jae Geun Lee
Isabell Lepin
Katja Mehrwald
Erik Rohe
Paul Schmidt Yáñez

Visitors (Sabbaticals, Guest Scientists, Internships)

Bryce Alex, Student intern, Univ Utah (DAAD-RISE program)
Beata Baranova Visiting Scientist, Univ Presov
Joanna Chao, Student intern, UC Berkley/Humboldt Univ
Maria Angenica Fulo Regilme, Visiting PhD Student, Ehime Univ
Jana Kulichová, Visiting Professor, Charles Univ
Arnelyn Larano, Visiting PhD Student, Ehime Univ
Jessica J Lee, Guest Scientist / Writer in Residence
Alejandro Martinez, Water Research Institute (CNR-IRSA)
Cristina Miño, Student Intern, Vrije Universiteit Brussel
Silvia Martín Muñoz, PhD Student, Univ Antwerp
Kei Nukazawa, Visiting PhD student, Tohoku Univ
Snaebjörn Pálsson, Visiting Professor, Univ Iceland
Paria Raoufi, Visiting PhD Student, Gonbad Kavous Univ
Joeselle Serrana, Visiting PhD Student, Ehime Univ
Rania Siam, Visiting Professor, American Univ Cairo
Lucas Sire, Visiting PhD Student, Université de Tours
Masano Suiyoshi, Visiting PhD Student, Hokkaido Univ
Noriko Uchida, Visiting PhD Student, Tohoku Univ
Máté Vass, Visiting MSc Student, Univ Pannonia
Kozo Watanabe, Visiting Professor, Ehime Univ
Sakiko Yaegashi, Visiting PhD student, Tohoku Univ

 

 

 

 

 

Publications

2025

March 2025
O. Shumilova; A. Sukhodolov; N. Osadcha; A. Oreshchenko; G. Constantinescu; S. Afanasyev; M. Koken; V. Osadchyi; B. Rhoads; K. Tockner; M. T. Monaghan; B. Schröder; J. Nabyvanets; C. Wolter; O. Lietytska; J. van de Koppel; N. Magas; S. C. Jähnig; V. Lakisova; G. Trokhymenko; M. Venohr; V. Komorin; S. Stepanenko; V. Khilchevskyi; S. Domisch; M. Blettler; P. Gleick; L. De Meester; H.-P. Grossart

2024

October 2024
Dominik Buchner; James S. Sinclair; Manfred Ayasse; Arne J. Beermann; Jörn Buse; Frank Dziock; Julian Enss; Mark Frenze; Thomas Hörren; Yuanheng Li; Michael T. Monaghan; Carsten Morkel; Jörg Müller; Steffen U. Pauls; Ronny Richter; Tobias Scharnweber; Martin Sorg; Stefan Stoll; Sönke Twietmeyer; Wolfgang W. Weisser; Benedikt Wiggering; Martin Wilmking; Gerhard Zotz; Mark O. Gessner; Peter Haase; Florian Leese

2023

September 2023
Kathrin Theissinger; Carlos Fernandes; Giulio Formenti; Iliana Bista; Paul R. Berg; Christoph Bleidorn; Aureliano Bombarely; Angelica Crottini; Guido R. Gallo; José A. Godoy; Sissel Jentoft; Joanna Malukiewicz; Alice Mouton; Rebekah A. Oomen; Sadye Paez; Per J. Palsbøll; Christophe Pampoulie; María J. Ruiz-López; Simona Secomandi; Hannes Svardal; Constantina Theofanopoulou; Jan de Vries; Ann-Marie Waldvogel; Guojie Zhang; Erich D. Jarvis; Miklós Bálint; Claudio Ciofi; Robert M. Waterhouse; Camila J. Mazzoni; Jacob Höglund ... Michael T. Monaghan ...

2022

December 2022
Ellen A.R. Welti ; Petr Zajicek ; Mark Frenzel ; Manfred Ayasse ; Tim Bornholdt ; Jörn Buse ; Alice Classen ; Frank Dziock ; Rolf A. Engelmann ; Jana Englmeier ; Martin Fellendorf ; Marc I. Förschler ; Ute Fricke ; Cristina Ganuza ; Mathias Hippke ; Günter Hoenselaar ; Andrea Kaus-Thiel ; Janika Kerner ; Daniela Kilian ; Klaus Mandery ; Andreas Marten ; Michael T. Monaghan ; Carsten Morkel ; Jörg Müller ; Stephanie Puffpaff ; Sarah Redlich ; Ronny Richter ; Sandra Rojas-Botero ; Tobias Scharnweber ; Gregor Scheiffarth ; Paul Schmidt Yáñez ; Rhena Schumann ; Sebastian Seibold ; Ingolf Steffan-Dewenter ; Stefan Stoll ; Cynthia Tobisch ; Sönke Twietmeyer ; Johannes Uhler ; Juliane Vogt ; Dirk Weis ; Wolfgang W. Weisser ; Martin Wilmking ; Peter Haase
July 2022
Giulio Formenti ; Kathrin Theissinger ; Carlos Fernandes ; Iliana Bista ; Aureliano Bombarely ; Christoph Bleidorn ; Claudio Ciofi ; Angelica Crottini ; José A. Godoy, Jacob Höglund ; Joanna Malukiewicz ; Alice Mouton ; Rebekah A. Oomen ; Sadye Paez ; Per J. Palsbøll ; Christophe Pampoulie ; María J. Ruiz-López ; Hannes Svardal ; Constantina Theofanopoulou ; Jan de Vries ; Ann-Marie Waldvogel ; Guojie Zhang ; Camila J. Mazzoni ; Erich D. Jarvis ; Miklós Bálint ; European Reference Genome Atlas (ERGA) Consortium (Formenti et al. ... Michael T. Monaghan ... Gabrielle Zammit)
April 2022
Thonicke, K.; Rahner, E.; Arneth, A.; Bartkowski, B.; Bonn, A.; Döhler, C.; Finger, R.; Freitag, J.; Grosch, R.; Grossart, H.-P.; Grützmacher, K.; Hartman Scholz, A.; Häuser, C.; Hickler, T.; Hölker, F.; Jähnig, S. C.; Jeschke, J.; Kasen, R.; Kastner, T.; Kramer-Schadt, S.; Krug, C.; Lakner, S.; Loft, L.; Matzdorf, B.; Meakins, F.; De Meester, L.; Monaghan, M. T.; Müller, D.; Overmann, J.; Quaas, M.; Radchuk, V.; Reyer, C.; Roos, C.; Scholz, I.; Schroer, S.; Sioen, G. B.; Sommer, S.; Sommerwerk, N.; Tockner, K. ... und viele weitere. Herausgeber: Potsdam-Institut für Klimafolgenforschung e. V. (PIK) Mitglied der Leibniz-Gemeinschaft

10 Must Knows from Biodiversity Science 2022

April 2022
Thonicke, K.; Rahner, E.; Arneth, A.; Bartkowski, B.; Bonn, A.; Döhler, C.; Finger, R.; Freitag, J.; Grosch, R.; Grossart, H.-P.; Grützmacher, K.; Hartman Scholz, A.; Häuser, C.; Hickler, T.; Hölker, F.; Jähnig, S. C.; Jeschke, J.; Kasen, R.; Kastner, T.; Kramer-Schadt, S.; Krug, C.; Lakner, S.; Loft, L.; Matzdorf, B.; Meakins, F.; De Meester, L.; Monaghan, M. T.; Müller, D.; Overmann, J.; Quaas, M.; Radchuk, V.; Reyer, C.; Roos, C.; Scholz, I.; Schroer, S.; Sioen, G. B.; Sommer, S.; Sommerwerk, N.; Tockner, K. ... und viele weitere. Herausgeber: Potsdam-Institut für Klimafolgenforschung e. V. (PIK) Mitglied der Leibniz-Gemeinschaft

10 Must-Knows aus der Biodiversitätsforschung 2022

February 2022
Alain Maasri; Sonja C. Jähnig; Mihai C. Adamescu; Rita Adrian; Claudio Baigun; Donald J. Baird; Angelica Batista-Morales; Núria Bonada; Lee E. Brown; Qinghua Cai; Joao V. Campos-Silva; Viola Clausnitzer; Topiltzin Contreras-MacBeath; Steven J. Cooke; Thibault Datry; Gonzalo Delacámara; Luc De Meester; Klaus-Douwe B. Dijkstra; Van Tu Do; Sami Domisch; David Dudgeon; Tibor Erös; Hendrik Freitag; Joerg Freyhof; Jana Friedrich; Martin Friedrichs-Manthey; Juergen Geist; Mark O. Gessner; Peter Goethals; Matthew Gollock; Christopher Gordon; Hans-Peter Grossart; Georges Gulemvuga; Pablo E. Gutiérrez-Fonseca; Peter Haase; Daniel Hering; Hans Jürgen Hahn; Charles P. Hawkins; Fengzhi He; Jani Heino; Virgilio Hermoso; Zeb Hogan; Franz Hölker; Jonathan M. Jeschke; Meilan Jiang; Richard K. Johnson; Gregor Kalinkat; Bakhtiyor K. Karimov; Aventino Kasangaki; Ismael A. Kimirei; Bert Kohlmann; Mathias Kuemmerlen; Jan J. Kuiper; Benjamin Kupilas; Simone D. Langhans; Richard Lansdown; Florian Leese; Francis S. Magbanua; Shin-ichiro S. Matsuzaki; Michael T. Monaghan; Levan Mumladze; Javier Muzon; Pierre A. Mvogo Ndongo; Jens C. Nejstgaard; Oxana Nikitina; Clifford Ochs; Oghenekaro Nelson Odume; Jeffrey J. Opperman; Harmony Patricio; Steffen U. Pauls; Rajeev Raghavan; Alonso Ramírez; Bindiya Rashni; Vere Ross-Gillespie; Michael J. Samways; Ralf B. Schäfer; Astrid Schmidt-Kloiber; Ole Seehausen; Deep Narayan Shah; Subodh Sharma; Janne Soininen; Nike Sommerwerk; Jason D. Stockwell; Frank Suhling; Ram Devi Tachamo Shah; Rebecca E. Tharme; James H. Thorp; David Tickner; Klement Tockner; Jonathan D. Tonkin; Mireia Valle; Jean Vitule; Martin Volk; Ding Wang; Christian Wolter; Susanne Worischka

2021

September 2021
Naiara Rodriguez-Ezpeleta; Olivier Morissette; Colin W. Bean; Shivakumara Manu; Pritam Banerjee; Anaïs Lacoursière-Roussel; Kingsly C. Beng; S. Elizabeth Alter; Fabian Roger; Luke E. Holman; Kathryn A. Stewart; Michael T. Monaghan; Quentin Mauvisseau; Luca Mirimin; Owen S. Wangensteen; Caterina M. Antognazza; Sarah J. Helyar; Hugo de Boer; Marie-Eve Monchamp; Reindert Nijland; Cathryn L. Abbott; Hideyuki Doi; Matthew A. Barnes; Matthieu Leray; Pascal I. Hablützel; Kristy Deiner
February 2021
Charles B. van Rees; Kerry A. Waylen; Astrid Schmidt‐Kloiber; Stephen J. Thackeray; Gregor Kalinkat; Koen Martens; Sami Domisch; Ana I. Lillebø; Virgilio Hermoso; Hans‐Peter Grossart; Rafaela Schinegger; Kris Decleer; Tim Adriaens; Luc Denys; Ivan Jarić; Jan H. Janse; Michael T. Monaghan; Aaike De Wever; Ilse Geijzendorffer; Mihai C. Adamescu; Sonja C. Jähnig
February 2021
Sonja C. Jähnig; Viktor Baranov; Florian Altermatt; Peter Cranston; Martin Friedrichs‐Manthey; Juergen Geist; Fengzhi He; Jani Heino; Daniel Hering; Franz Hölker; Jonas Jourdan; Gregor Kalinkat; Jens Kiesel; Florian Leese; Alain Maasri; Michael T. Monaghan; Ralf B. Schäfer; Klement Tockner; Jonathan D. Tonkin; Sami Domisch

2020

2019

2018

January 2019
Jean-Luc Gattolliat; Sereina Rutschmann; Michael T. Monaghan; Michel Sartori

From molecular hypotheses to valid species: description of three endemic species of Baetis (Ephemeroptera: Baetidae) from the Canary Islands

Arthropod Systematics & Phylogeny. - 76(2018)3, S. 509-528
August 2018
Wiliam Darwall; Vanessa Bremerich; Aaike De Wever; Anthony I. Dell; Jörg Freyhof; Mark O. Gessner; Hans-Peter Grossart; Ian Harrison; Ken Irvine; Sonja C. Jähnig; Jonathan M. Jeschke; Jessica J. Lee; Cai Lu; Aleksandra M. Lewandowska; Michael T. Monaghan; Jens C. Nejstgaard; Harmony Patricio; Astrid Schmidt-Kloiber; Simon N. Stuart; Michele Thieme; Klement Tockner; Eren Turak; Olaf Weyl

2017

October 2017
Ann-Christin Honnen; Michael T. Monaghan

City-dwellers and country folks: lack of population differentiation along an urban-rural gradient in the mosquito Culex pipiens (Diptera: Culicidae)

Journal of Insect Science. - 17(2017)5, 107

2016

2015

December 2015
Stephanie I. J. Holzhauer; Steffen Franke; Christopher C. M. Kyba; Alessandro Manfrin; Reinhard Klenke; Christian C. Voigt; Daniel Lewanzik; Martin Oehlert; Michael T. Monaghan; Sebastian Schneider; Stefan Heller; Helga Kuechly; Anika Brüning; Ann-Christin Honnen; Franz Hölker

2014

July 2014
M. F. Geiger; F. Herder; M. T. Monaghan; V. Almada; R. Barbieri; M. Bariche; P. Berrebi; J. Bohlen; M. Casal-Lopez; G. B. Delmastro; G. P. J. Denys; A. Dettal; I. Doadrio; E. Kalogianni; H. Kärst; M. Kottelat; M. Kovacić; M. Laporte; M. Lorenzoni; Z. Marcić; M. Özulig; A. Perdices; S. Perea; H. Persat; S. Porcelotti; C. Puzzi; J. Robalo; R. Sanda; M. Schneider; V. Slechtová; M. Stoumboudi; S. Walter; J. Freyhof

2013

2012

March 2013
Reinhard Gerecke; Michael Monaghan

Eintagsfliegen (Ephemeroptera)

Quellen / Red.: Reinhard Gerecke. - Weng im Gesäuse, 2012. - Kapitel IV/3. - S. 132-141
April 2012
Maribet Gamboa; Ryan K. Kimbirauskas; Richard W. Merritt; Michael T. Monaghan

A molecular approach to identifying the natural prey of the African creeping water bug Naucoris, a potential reservoir of Mycobacterium ulcerans

Journal of Insect Science. - 12(2012)art.2

2011

2010

September 2010
Aurel I. Lozan; Sergey Belokobylskij; Cees van Achterberg; Michael T. Monaghan

Diversity and distribution of Braconidae, a family of parasitoid wasps in the Central European peatbogs of South Bohemia, Czech Republic

Journal of insect science. - 10(2010)16
May 2010
Thomas Mehner; Kirsten Pohlmann; Che Elkin; Michael T. Monaghan; Barbara Nitz; Jörg Freyhof

Genetic population structure of sympatric and allopatric populations of Baltic ciscoes (Coregonus albula complex, Teleostei, Coregonidae)

BMC evolutionary biology. - 10(2010)85

2009

2008

April 2011
Jean-Luc Gattolliat; Samantha J. Hughes; Michael T. Monaghan; Michel Sartori

Revision of Madeiran mayflies (Insecta, Ephemeroptera)

Zootaxa. - 1957(2008), S. 52-68
March 2011
Jean-Luc Gattolliat; Michael T. Monaghan; Michel Sartori; Jean-Marc Elouard; Helen Barber-James; Pascale Derleth; Olivier Glaizot; Ferdy de Moor; Alfried P. Vogler

A molecular analysis of the afrotropical Baetidae

International advances in the ecology, zoogeography, and systematics of mayflies and stoneflies / ed. by F. R. Hauer ... - Berkeley, Calif., 2008, S. 219-232