(Dept. 3) Plankton and Microbial Ecology

Research in the Department of Plankton and Microbial Ecology on the shores of Lake Stechlin centres on impacts of global environmental change on inland waters. Consequences on the biodiversity and functioning of plankton communities in lakes receive particular attention. This includes investigations into the dynamics, activities and interactions of bacteria, phytoplankton, zooplankton and fungi. Field experiments, especially in a large outdoor facility dubbed the LakeLab in Lake Stechlin, are a hallmark of research in the department. Other essential elements are the analysis of long-term data, laboratory experiments and the development of ecological models and new methods to analyse plankton communities. We use the knowledge gained in theses studies to devise concepts and methods that foster the protection and sustainable management of inland waters in the face of ongoing environmental change.

Research groups

Stella A. Berger
Hans-Peter Grossart
Jens Christian Nejstgaard
Sabine Wollrab

Department members

Selected publications

September 2025
Nature microbiology. - 10(2025), 2384–2395

A roadmap for equitable reuse of public microbiome data

Laura A. Hug; Roland Hatzenpichler; Cristina Moraru; André R. Soares; Folker Meyer; Anke Heyder; The Data Reuse Consortium; Alexander J. Probst

Science benefits from the rapid and open exchange of knowledge. However, there is a lack of appropriate community standards for data exchange between different institutions. In this article the authors discuss improvements for the exchange of extensive microbiome data.

Nature_Water
September 2025
Nature Water. - 3(2025), 963–964

Europe’s water law needs genomic resolution

Adrian-Stefan Andrei; Hans-Peter Grossart; Jakob Pernthaler

The authors recommend a new genetic approach for the obligatory measurements under the European Water Framework Directive (WFD). Currently, the diversity of phytoplankton – i.e. microalgae – is assessed as a key parameter for water quality using an inverse microscope technique that has been in use since 1958.

Cover_Scientific_Data
June 2025
Scientific Data. - 12(2025), Art. 1028

Fifty years of limnological data on Lake Stechlin, a temperate clearwater lake

Sabine Wollrab; Silke R. Schmidt; Jason Woodhouse; Peter Kasprzak; Stella A. Berger; Ute Beyer; Matthias Bodenlos; Johanna Dalchow; Monika Degebrodt; Lars Ganzert; Thomas Gonsiorczyk; Elfi Huth; Christine Kiel; Lutz Küchler; Lothar Krienitz; Maren Lentz; Elke Mach; Uta Mallok; Jens C. Nejstgaard; Monika Papke; Armin Penske; Solvig Pinnow; Reingard Roßberg; Diethelm Ronneberger; Michael Sachtleben; Adelheid Scheffler; Hans-Peter Grossart; Peter Casper; Mark O. Gessner; Rainer Koschel

The presented dataset from Lake Stechlin covers basic water-chemical and physical records taken at monthly to fortnightly intervals from 1970 to 2020, documenting limnological changes during that period. Furthermore, it serves as a valuable basis to assess and project potential consequences of climate change and other types of environmental change on deep clearwater lakes in temperate climates.

March 2025
Ecology. - 106(2025)3, Art. e70043

Cell size explains shift in phytoplankton community structure following storm-induced changes in light and nutrients

Alexis L. N. Guislain; Jens C. Nejstgaard; Jan Köhler; Erik Sperfeld; Ute Mischke; Birger Skjelbred; Hans-Peter Grossart; Anne Lyche Solheim; Mark O. Gessner; Stella A. Berger

 In a LakeLab experiment we investigated whether cell size explains shifts in phytoplankton communities following changes in nutrient and light conditions from storm-induced nutrients and cDOM loadings. Cell size explained phytoplankton community structure when light availability declined following cDOM addition and cell-size distribution gradually shifted toward large-celled species.

February 2025
Oikos. - 2025(2025)5, Art. e11020

Addressing grand ecological challenges in aquatic ecosystems: how can mesocosms be used to advance solutions?

Samuel J. Macaulay; Erik Jeppesen; Ulf Riebesell; Jens C. Nejstgaard; Stella A. Berger; Aleksandra M. Lewandowska; Andreu Rico; Ben J. Kefford; Csaba F. Vad; David M. Costello; Haijun Wang; Iris Madge Pimentel; Joana Barcelos e Ramos; Jose González; Kristian Spilling; Lisette de Senerpont Domis; Maarten Boersma; Maria Stockenreiter; Mariana Meerhoff; Martina G. Vijver; Mary Kelly-Quinn; Meryem Beklioğlu; Miguel G. Matias; Michael Sswat; Noël P. D. Juvigny-Khenafou; Patrick Fink; Peiyu Zhang; Ricardo H. Taniwaki; Robert Ptacnik; Silke Langenheder; Tom A. P. Nederstigt; Zsófia Horváth; Jeremy J. Piggott

Marine and freshwater researchers using mesocosms synthesise their recommendations on opportunities and limitations for advancing solutions to grand ecological challenges in aquatic ecosystems. They focus on the unexplored potential for using mesocosms to test solutions to human impacts on aquatic ecosystems. This will need novel collaborations between ecologists and technological developers.