(Dept. 3) Plankton and Microbial Ecology

Research in the Department of Plankton and Microbial Ecology on the shores of Lake Stechlin centres on impacts of global environmental change on inland waters. Consequences on the biodiversity and functioning of plankton communities in lakes receive particular attention. This includes investigations into the dynamics, activities and interactions of bacteria, phytoplankton, zooplankton and fungi. Field experiments, especially in a large outdoor facility dubbed the LakeLab in Lake Stechlin, are a hallmark of research in the department. Other essential elements are the analysis of long-term data, laboratory experiments and the development of ecological models and new methods to analyse plankton communities. We use the knowledge gained in theses studies to devise concepts and methods that foster the protection and sustainable management of inland waters in the face of ongoing environmental change.

Research groups

Stella A. Berger
Hans-Peter Grossart
Jens Christian Nejstgaard
Sabine Wollrab

Department members

Selected publications

Journal_Cleaner_Production
September 2026
Journal of Cleaner Production. - 578(2026), Art. 149535

Mechanical harvesting of cyanobacterial blooms shifts greenhouse gas potential to post-harvest sludge in a hypereutrophic lake

Shenghe Cai; Nan Hu; Liu Liu; Yang Li; Min Pan; Bo Liu; Linfu Shen; Wei Sheng; Hans-Peter Grossart; Xingqiang Wu

Cyanobacterial blooms are increasingly managed through large-scale mechanical harvesting to improve water quality and ensure a continued supply of drinking water. However, as this study shows, this does not prevent greenhouse gas emissions. Just like the affected lakes, the harvested cyanobacterial sludge also releases methane, particularly when it still contains a high moisture content. 

January 2026
Nature Geoscience. - 19(2026), 165–172

Distinct contributions of suspended and sinking prokaryotes to mesopelagic carbon budget

Pauline Le Coq; Urania Christaki; France Van Wambeke; Elisabeth Chevillon; Bruno Zakardjian; Marc Garel; Sophie Guasco; Chloé M. J. Baumas; Anne E. Dekas; Patricia Bonin; Badr Al Ali; Maéva Gesson; Frédéric Le Moigne; Mireille Pujo-Pay; Olivier Crispi; Olivier Grosso; Thierry Moutin; Nagib Bhairy; Emmanuel de Saint Léger; Laurent Memery; Lionel Guidi; Fabrice Armougom; Hans-Peter Grossart; Christian Tamburini

Oceans are important carbon sinks. Bacteria play a central role in carbon cycling because, collectively, they convert more organic material than all other marine organisms combined. Their activity acts as a “carbon pump”, ensuring that life is possible in the deep sea. The authors quantified the effect of bacteria in the middle ocean layers, known as the twilight zone, in the North-East Atlantic.

December 2025
Limnology and Oceanography. - 71(2026)1, Art. e70285

Flow variability and macroinvertebrates jointly regulate stream periphyton and metabolism: Insights from experimental stream mesocosms

Flavia Tromboni; Carolina Jativa; Carina Seitz; Alain Maasri; Silvia Mohr; Hans-Peter Grossart; Giulia Grandi; Enrico Bertuzzo; Sonja C. Jähnig; Clara Mendoza-Lera; Andreas Lorke; Marco Cantonati; Anna Lupon; Susana Bernal

In stream mesocosm experiments the authors tested how reduced flow and a sequence of controlled flushing events, with or without macroinvertebrates, affect periphyton community composition, algal biovolume, and ecosystem metabolism. Flow variability and macroinvertebrates control periphyton structure, metabolism, and carbon cycling, with macroinvertebrates stabilising responses to disturbance.

December 2025
Frontiers in Remote Sensing. - 17(2025)24, Art. 4008

Advancements in Satellite Observations of Inland and Coastal Waters: Building Towards a Global Validation Network

Dulcinea M. Avouris; Fernanda Maciel; Samantha L. Sharp; Susanne E. Craig; Arnold G. Dekker; Courtney A. Di Vittorio; John R. Gardner; Emma Goldsmith; Juan I. Gossn; Steven R. Greb; Brice K. Grunert; Daniela Gurlin; Mahesh Jampani; Rabia Munsaf Khan; Ben Lowin; Lachlan McKinna; Colleen B. Mouw; Igor Ogashawara; Sara Rivero Calle; Wilson Salls; Joan-Albert Sánchez-Cabeza; Blake Schaeffer; Bridget N. Seegers; Jari Silander; Emily A. Smail; Menghua Wang; Jeremy Werdell

This article highlights the importance of validating satellite-derived water quality products. The authors provide guidance for the scientific community on what to consider when implementing field campaigns to collect data for remote sensing validation needs.

Titelbild Nature_Medicine
November 2025
Nature Medicine. - (2025)

Challenges in studying microplastics in human brain

Fazel A. Monikh; Dušan Materić; Eugenia Valsami-Jones; Hans-Peter Grossart; Korinna Altmann; Rupert Holzinger; Iseult Lynch; Jessica Stubenrauch; Willie Peijnenburg

Microplastics are ubiquitous – in the environment and in the human body. However, accurately detecting these particles poses major challenges for researchers from various disciplines. The authors described the methodological difficulties in the journal and call for more standardized methods in biomonitoring.